Gene identification in the oomycete pathogen Phytophthora parasitica during in vitro vegetative growth through expressed sequence tags.
Identifieur interne : 002180 ( Main/Exploration ); précédent : 002179; suivant : 002181Gene identification in the oomycete pathogen Phytophthora parasitica during in vitro vegetative growth through expressed sequence tags.
Auteurs : Franck Panabières [France] ; Joëlle Amselem ; Eric Galiana ; Jo-Yanne Le BerreSource :
- Fungal genetics and biology : FG & B [ 1087-1845 ] ; 2005.
Descripteurs français
- KwdFr :
- Alignement de séquences (MeSH), Analyse de séquence d'ADN (MeSH), Banque de gènes (MeSH), Données de séquences moléculaires (MeSH), Gènes fongiques (MeSH), Mycelium (croissance et développement), Mycelium (génétique), Mycelium (pathogénicité), Phylogenèse (MeSH), Phytophthora (croissance et développement), Phytophthora (génétique), Phytophthora (pathogénicité), Protéines fongiques (génétique), Protéines fongiques (métabolisme), Protéome (MeSH), Séquence d'acides aminés (MeSH), Séquence nucléotidique (MeSH), Transcription génétique (MeSH), Étiquettes de séquences exprimées (métabolisme).
- MESH :
- croissance et développement : Mycelium, Phytophthora.
- génétique : Mycelium, Phytophthora, Protéines fongiques.
- métabolisme : Protéines fongiques, Étiquettes de séquences exprimées.
- pathogénicité : Mycelium, Phytophthora.
- Alignement de séquences, Analyse de séquence d'ADN, Banque de gènes, Données de séquences moléculaires, Gènes fongiques, Phylogenèse, Protéome, Séquence d'acides aminés, Séquence nucléotidique, Transcription génétique.
English descriptors
- KwdEn :
- Amino Acid Sequence (MeSH), Base Sequence (MeSH), Expressed Sequence Tags (metabolism), Fungal Proteins (genetics), Fungal Proteins (metabolism), Gene Library (MeSH), Genes, Fungal (MeSH), Molecular Sequence Data (MeSH), Mycelium (genetics), Mycelium (growth & development), Mycelium (pathogenicity), Phylogeny (MeSH), Phytophthora (genetics), Phytophthora (growth & development), Phytophthora (pathogenicity), Proteome (MeSH), Sequence Alignment (MeSH), Sequence Analysis, DNA (MeSH), Transcription, Genetic (MeSH).
- MESH :
- chemical , genetics : Fungal Proteins.
- genetics : Mycelium, Phytophthora.
- growth & development : Mycelium, Phytophthora.
- metabolism : Expressed Sequence Tags, Fungal Proteins.
- pathogenicity : Mycelium, Phytophthora.
- Amino Acid Sequence, Base Sequence, Gene Library, Genes, Fungal, Molecular Sequence Data, Phylogeny, Proteome, Sequence Alignment, Sequence Analysis, DNA, Transcription, Genetic.
Abstract
Phytophthora parasitica is a soilborne oomycete pathogen capable of infecting a wide range of plants, including many solanaceous plants. In a first step towards large-scale gene discovery, we generated expressed sequence tags (ESTs) from a cDNA library constructed using mycelium grown in synthetic medium. A total of 3568 ESTs were assembled into 2269 contiguous sequences. Functional categorization could be performed for 65.45% of ESTs. A significant portion of the transcripts encodes proteins of common metabolic pathways. The most prominent sequences correspond to members of the elicitin family, and enzymes involved in the lipid metabolism. A number of genes potentially involved in pathogenesis were also identified, which may constitute virulence determinants.
DOI: 10.1016/j.fgb.2005.03.002
PubMed: 15950158
Affiliations:
Links toward previous steps (curation, corpus...)
Le document en format XML
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name="Provence-Alpes-Côte d'Azur"><name sortKey="Panabieres, Franck" sort="Panabieres, Franck" uniqKey="Panabieres F" first="Franck" last="Panabières">Franck Panabières</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
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